CBE - Liquid-liquid Phase Separation of Charged Polymers and Biomolecules

This work will use molecular simulation techniques (Monte Carlo and Molecular Dynamics simulation) along with appropriate mathematical modeling and statistical analysis to examine the driving forces behind liquid-liquid phase separation in synthetic polymers and biomolecules. Recent work has implicated liquid-liquid phase separation (LLPS) in cellular environments as a driver of disease pathology. However, the physical and chemical conditions which result in intracellular LLPS are poorly understood. This project will collaborate with experimental groups both at ND and elsewhere to explain novel findings regarding cellular pH and local compositional differences in driving LLPS.

Name of research group, project, or lab
The Whitmer Group
Why join this research group or lab?

We model fun things. 

Logistics Information:
Project categories
Chemical and Biomolecular Engineering
Chemistry and Biochemistry
Student ranks applicable
Sophomore
Junior
Senior
Student qualifications

Good math skills, some coding is helpful (we'll teach you more), a curious mind.

Hours per week
1 credit / 3-6 hours
2 credits / 6-12 hours
Compensation
Research for Credit
Number of openings
1
Techniques learned

Students will learn:

1) Data analysis skills
2) Computational skills: Linux environments and high-throughput computing.
3) Programming skills (shell scripting, python, C++)
4) Applications of physical chemistry principles (Statistical Mechanics, Thermodynamics, Kinetics)

 

Project start
Spring Semester
Contact Information:
Mentor
jwhitme1@nd.edu
Associate Professor
Name of project director or principal investigator
Jonathan Whitmer
Email address of project director or principal investigator
jwhitme1@nd.edu
1 sp. | 5 appl.
Hours per week
1 credit / 3-6 hours (+1)
1 credit / 3-6 hours2 credits / 6-12 hours
Project categories
Chemistry and Biochemistry (+1)
Chemical and Biomolecular EngineeringChemistry and Biochemistry