Elucidating the function of atypical PDR-type ABC transporters in the fungal pathogen Cryptococcus neoformans

We have 2 positions available for undergraduates to participate on biomedical research studying the pathogenic fungus Cryptococcus neoformans. Cryptococcus is an environmental yeast present worldwide and is one of the most common causative agents of invasive fungal infections, responsible for close to 300,000 cases of meningitis yearly, with 200,000 of them dying. Fungal pathogens have been neglected for decades, hence, there is an incomplete understanding of their pathogenesis. We have identified a gene, an ABC transporter of the PDR-type, that when deleted, makes the fungus hypersensitive to antifungals and, interestingly, alters the disease progression and the animals die of pneumonia rather than the typical meningitis. Notably, this gene is an atypical PDR gene, and Cryptococcus has 3 more of these atypical transporters, but none have been studied prior to our work. We are interested in elucidating the function of these other 3 atypical PDR genes. The student in this position will assist a graduate student carry out various assays with the hope that they will learn the methods and techniques in order to become independent later on. Hence, preference will be given to students that are interested on a research career and committed to spend at least 3 hours a week working in the lab. Because I envision the student taking ownership of the project, freshmen are highly encouraged to apply such that you can start in the laboratory during your second year, providing enough time to learn, grow, and become independent. Sophomore applicants will also be considered; however, junior applicants will have lower priority unless they have already considerable research experience.

Name of research group, project, or lab
The Santiago-Tirado Lab
Why join this research group or lab?

In the Santiago-Tirado lab, we strive to have a fun(gi), supportive, and collaborative culture, where everybody learns and enjoys their work. We work closely with the Flores-Mireles lab, and we are a big academic family! Check out our virtual lab tour posted in our website, and if interested, check some of our pictures of lab gatherings and read our lab Guidelines and Expectations. In addition to the project described here, you will be expose to several other lines of research that includes neuroscience, genomics, and even immunology. Through our collaboration with the Flores-Mireles Lab, you will also be expose to material sciences and bacterial pathogenesis. Contact our current undergraduate researchers to find out why the Santiago-Tirado lab is such a great place to work, learn, and grow!

Logistics Information:
Project categories
Biological Sciences
Student ranks applicable
First Year
Sophomore
Junior
Student qualifications

Some amount of wet lab research experience is preferred. But most importantly, the student must have enough time in their schedule to seriously commit to at least 3 hours a week. This would be the minimum and will corresponds to 1 academic credit. Typically, all students start with 1-credit and as they become independent and spend more time in the lab, 2 credits can be offered.  If multiple applications are received, one of the main criteria I will use to decide is the time availability of the student. It is hard to get anything done in research if you cannot commit time to it!

Hours per week
1 credit / 3-6 hours
2 credits / 6-12 hours
Compensation
Research for Credit
Number of openings
2
Techniques learned

Initially, the student will assist a graduate student with their work, learning basic microbiological techniques such as aseptic techniques, streaking microbes on solid media, growing them on liquid media, transforming DNA, and preparing DNA from these microbes. Later on their training, various techniques/methods could be learn depending on the direction of the project. These can include: genomic modification of the microbes by CRISPR-Cas9, creation and modification of DNA by PCR and other cloning techniques (restriction digest, ligation, etc.), tissue culture techniques involving human and murine cell lines, microscopy, skills with specialized software, and oral and written presentation skills (students in my lab are required to present and attend conferences, local and regional, at last one time).

Project start
Fall 2025
Contact Information:
Mentor
fsantiag@nd.edu
Tenure-track professor
Name of project director or principal investigator
Felipe H. Santiago-Tirado
Email address of project director or principal investigator
fsantiago@nd.edu
2 sp. | 0 appl.
Hours per week
1 credit / 3-6 hours (+1)
1 credit / 3-6 hours2 credits / 6-12 hours
Project categories
Biological Sciences